| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 402 |
| Arabian Sea | Sea/Bay/Gulf | native | 402 |
| Bay of Bengal | Sea/Bay/Gulf | native | 402 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 402 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 402 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 402 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 402 |
| Indonesian Sea | Sea/Bay/Gulf | native | 402 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| North Australian Shelf | Sea/Bay/Gulf | native | 402 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 402 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 402 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Persian Gulf | Sea/Bay/Gulf | native | 402 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Socotra Archipelago | Sea/Bay/Gulf | native | 37631 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 402 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 402 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 402 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |