| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 6871 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Oman | Sea/Bay/Gulf | native | 87400 |
| Indian Ocean | Sea/Bay/Gulf | native | 6871 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Pacific Ocean | Sea/Bay/Gulf | native | 6871 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 68964 |
| Peru-Galapagos Waters | Sea/Bay/Gulf | native | 5227 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 12484 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |