| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | native | 41590 |
| Congo | River (basin) | native | 41590 |
| Cuanza | River (basin) | questionable | 120641 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Etosha | Lake | native | 120641 |
| Kunene | River (basin) | native | 33857 |
| Limpopo | River (basin) | native | 13337 |
| Lower Zambezi | River (basin) | native | 95585 |
| Malawi | Lake | native | 55909 |
| Middle Zambezi | River (basin) | native | 95585 |
| Mweru | Lake | native | 41590 |
| Okavango | River (basin) | native | 120641 |
| Orange | River (basin) | native | 33857 |
| Shire | River (basin) | native | 37112 |
| Upper Lualaba | River (basin) | native | 41613 |
| Zambezi | River (basin) | native | 13337 |