| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | native | 41590 |
| Bengo | River (basin) | native | 11970 |
| Chobe | River (basin) | native | 37065 |
| Coastal Southwest Angola | River (basin) | native | 11970 |
| Congo | River (basin) | native | 41590 |
| Cuanza | River (basin) | native | 11970 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Kariba | Lake | native | 39194 |
| Kunene | River (basin) | native | 33857 |
| Kwando | River (basin) | native | 37065 |
| Liambezi | Lake | native | 37065 |
| Limpopo | River (basin) | native | 13332 |
| Linyanti Swamp | Lake | native | 37065 |
| Lower Congo | River (basin) | native | 120641 |
| Lualaba | River (basin) | native | 41590 |
| Mweru | Lake | native | 41590 |
| Okavango | River (basin) | native | 7248 |
| Upper Zambezi | River (basin) | native | 120641 |
| Zambezi | River (basin) | native | 13332 |