| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| East China Sea | Sea/Bay/Gulf | native | 4855 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5193 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 4855 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 130287 |
| Tañon Strait | Sea/Bay/Gulf | native | 27943 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| West Philippine Sea | Sea/Bay/Gulf | native | 130287 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |