| Species | Name Used in Reference |
|---|---|
| Gymnothorax kidako (Temminck & Schlegel, 1846) | Gymnothorax kidako (p. 46;fig.13) |
| Gymnothorax longinaris Allen, Erdmann & Sianipar, 2018 | Gymnothorax longinaris (p. 38;fig.1-7;tab.1) |
| Gymnothorax paucivertebralis Allen, Erdmann & Sianipar, 2018 | Gymnothorax paucivertebralis (p. 43;fig.9-11;tab.1) |