| Ordre | Famille | Espèce | Occurrence | Nom FishBase | Name(s) in Territory |
|---|---|---|---|---|---|
| Tetraodontiformes | Balistidae | Abalistes stellatus | native | Starry triggerfish | Japanese : Okihagi |
| Lophiiformes | Antennariidae | Abantennarius analis | native | Tailjet frogfish | |
| Lophiiformes | Antennariidae | Abantennarius coccineus | native | Scarlet frogfish | Japanese : Gomafu-izariuo |
| Lophiiformes | Antennariidae | Abantennarius dorehensis | native | New Guinean frogfish | Japanese : Kasuri-izari-ou |
| Lophiiformes | Antennariidae | Abantennarius nummifer | native | Spotfin frogfish | Japanese : Beni-izariuo; Japanese : Nihon-izariuo; |
| Cypriniformes | Gobionidae | Abbottina rivularis | native | Chinese false gudgeon | Japanese : Tsuchifuki |
| Perciformes/Scorpaenoidei | Tetrarogidae | Ablabys gymnothorax | native | Scaleless spiny waspfsh | Japanese : Kasasa-haokoze |
| Perciformes/Scorpaenoidei | Tetrarogidae | Ablabys taenianotus | native | Cockatoo waspfish | Japanese : Tsumajiro-okoze |
| Beloniformes | Belonidae | Ablennes hians | native | Flat needlefish | Japanese : Hama-datsu |
| Ovalentaria/misc | Pomacentridae | Abudefduf bengalensis | native | Bengal sergeant | Japanese : Tenjiku-suzumedai |
| Ovalentaria/misc | Pomacentridae | Abudefduf lorenzi | native | Black-tail sergeant | |
| Ovalentaria/misc | Pomacentridae | Abudefduf notatus | native | Yellowtail sergeant | Japanese : Iso-suzumedai |
| Ovalentaria/misc | Pomacentridae | Abudefduf septemfasciatus | native | Banded sergeant | Japanese : Shichisen-suzumedai |
| Ovalentaria/misc | Pomacentridae | Abudefduf sexfasciatus | native | Scissortail sergeant | Japanese : Rokusen-suzumedai |
| Ovalentaria/misc | Pomacentridae | Abudefduf sordidus | native | Blackspot sergeant | Japanese : Shima-suzumedai |
| Ovalentaria/misc | Pomacentridae | Abudefduf vaigiensis | native | Indo-Pacific sergeant | Japanese : Oyabiccha |
| Acropomatiformes | Hemerocoetidae | Acanthaphritis barbata | native | Japanese : Higetoragisu | |
| Acropomatiformes | Hemerocoetidae | Acanthaphritis unoorum | native | ||
| Eupercaria/misc | Cepolidae | Acanthocepola krusensternii | native | Red-spotted bandfish | Japanese : Akatachi |
| Eupercaria/misc | Cepolidae | Acanthocepola limbata | native | Blackspot bandfish | Japanese : Itten-akatachi |
| Scombriformes | Scombridae | Acanthocybium solandri | native | Wahoo | Japanese : Kamasu-sawara |
| Gobiiformes | Gobiidae | Acanthogobius flavimanus | native | Yellowfin goby | Japanese : Mahaze |
| Gobiiformes | Gobiidae | Acanthogobius hasta | native | Japanese : Hazekuchi | |
| Gobiiformes | Gobiidae | Acanthogobius insularis | native | ||
| Gobiiformes | Gobiidae | Acanthogobius lactipes | native | Japanese : Ashishirohaze | |
| Perciformes/Zoarcoidei | Lumpenidae | Acantholumpenus mackayi | native | Pighead prickleback | Japanese : Nuimegaji |
| Ophidiiformes | Ophidiidae | Acanthonus armatus | native | Bony-eared assfish | Japanese : Hanatoge-ashiro |
| Eupercaria/misc | Sparidae | Acanthopagrus chinshira | native | Okinawan yellow-fin seabream | Japanese : Okinawa-kichinu |
| Eupercaria/misc | Sparidae | Acanthopagrus latus | native | Yellowfin seabream | Japanese : Kichinu |
| Eupercaria/misc | Sparidae | Acanthopagrus pacificus | native | Pacific seabream | Japanese : Nan'yo-chinu; Japanese : Nanyôchinu; |
| Eupercaria/misc | Sparidae | Acanthopagrus schlegelii | native | Blackhead seabream | Japanese : Kurodai |
| Ovalentaria/misc | Plesiopidae | Acanthoplesiops hiatti | native | Hiatt's basslet | |
| Ovalentaria/misc | Plesiopidae | Acanthoplesiops psilogaster | native | Barebelly longfin | Japanese : Fuchidori-tanabata-uo |
| Pleuronectiformes | Pleuronectidae | Acanthopsetta nadeshnyi | native | Scale-eye plaice | Japanese : Urokomegarei |
| Acanthuriformes | Acanthuridae | Acanthurus achilles | native | Achilles tang | |
| Acanthuriformes | Acanthuridae | Acanthurus bariene | native | Blackspot surgeonfish | Japanese : Kanranhagi |
| Acanthuriformes | Acanthuridae | Acanthurus blochii | native | Ringtail surgeonfish | |
| Acanthuriformes | Acanthuridae | Acanthurus dussumieri | native | Eyestripe surgeonfish | Japanese : Nise-kanranhagi |
| Acanthuriformes | Acanthuridae | Acanthurus guttatus | native | Whitespotted surgeonfish | Japanese : Gomaniza |
| Acanthuriformes | Acanthuridae | Acanthurus japonicus | native | Japan surgeonfish | |
| Acanthuriformes | Acanthuridae | Acanthurus leucopareius | native | Whitebar surgeonfish | Japanese : Suji-kurohagi |
| Acanthuriformes | Acanthuridae | Acanthurus lineatus | native | Lined surgeonfish | Japanese : Nijihagi |
| Acanthuriformes | Acanthuridae | Acanthurus maculiceps | native | White-freckled surgeonfish | Japanese : Irezuminiza |
| Acanthuriformes | Acanthuridae | Acanthurus mata | native | Elongate surgeonfish | Japanese : Hiraniza |
| Acanthuriformes | Acanthuridae | Acanthurus nigricans | native | Whitecheek surgeonfish | Japanese : Megane-kurohagi |
| Acanthuriformes | Acanthuridae | Acanthurus nigricauda | native | Epaulette surgeonfish | |
| Acanthuriformes | Acanthuridae | Acanthurus nigrofuscus | native | Brown surgeonfish | Japanese : Naganiza |
| Acanthuriformes | Acanthuridae | Acanthurus olivaceus | native | Orangespot surgeonfish | Japanese : Montsukihagi |
| Acanthuriformes | Acanthuridae | Acanthurus pyroferus | native | Mimic surgeonfish | Japanese : Kuroguchiniza |
| Acanthuriformes | Acanthuridae | Acanthurus thompsoni | native | Thompson's surgeonfish | Japanese : Ohagurohagi |