| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 81278 |
| Ankobra | River (basin) | native | 88135 |
| Aruwimi | River (basin) | misidentification | 108775 |
| Bandama | River (basin) | native | 88135 |
| Benue | River (basin) | native | 88135 |
| Bia | River (basin) | native | 81278 |
| Boubo | River (basin) | native | 88135 |
| Casamance | River (basin) | misidentification | 94534 |
| Cavally | River (basin) | misidentification | 94534 |
| Cess | River (basin) | misidentification | 94534 |
| Chad | River (basin) | native | 81278 |
| Chari-Logone | River (basin) | native | 88135 |
| Chiloango | River (basin) | misidentification | 81637 |
| Chobe | River (basin) | misidentification | 37065 |
| Comoé | River (basin) | native | 81278 |
| Congo | River (basin) | misidentification | 108775 |
| Corubal | River (basin) | misidentification | 94534 |
| Cross | River (basin) | native | 88135 |
| Densu | River (basin) | native | 88135 |
| Ébrié | Lagoon | native | 88135 |
| Ethiopian | Zoogeographic realm | endemic | 3569 |
| Fatala | River (basin) | misidentification | 94534 |
| Gambia | River (basin) | misidentification | 94534 |
| Géba | River (basin) | misidentification | 94534 |
| Great Scarcies | River (basin) | misidentification | 94534 |
| Itimbiri | River (basin) | misidentification | 108775 |
| Kasai | River (basin) | misidentification | 108775 |
| Kienke | River (basin) | native | 88135 |
| Kogon | River (basin) | misidentification | 94534 |
| Komo | River (basin) | misidentification | 81367 |
| Konkouré | River (basin) | misidentification | 94534 |
| Kouilou-Niari | River (basin) | native | 81637 |
| Kunene | River (basin) | misidentification | 93907 |
| Kwando | River (basin) | misidentification | 37065 |
| Liambezi | Lake | misidentification | 37065 |
| Linyanti Swamp | Lake | misidentification | 37065 |
| Little Scarcies | River (basin) | misidentification | 94534 |
| Loémé | River (basin) | misidentification | 81637 |
| Lofa | River (basin) | misidentification | 94534 |
| Lower Niger | River (basin) | native | 88135 |
| Lukenie | River (basin) | misidentification | 108775 |
| Mai-Ndombe | Lake | misidentification | 108775 |
| Marine Lower Congo | River (basin) | misidentification | 108775 |
| Mbini | River (basin) | misidentification | 81637 |
| Middle Congo | River (basin) | misidentification | 1878 |
| Moa | River (basin) | misidentification | 94534 |
| Mono | River (basin) | native | 88135 |
| Mweru | Lake | misidentification | 108775 |
| Niger | River (basin) | native | 88135 |
| Niger Delta | River (basin) | native | 88135 |
| Ntem | River (basin) | misidentification | 81637 |
| Nyanga | River (basin) | misidentification | 81637 |
| Nyong | River (basin) | misidentification | 81637 |
| Ogowe | River (basin) | misidentification | 81637 |
| Ogun | River (basin) | native | 81278 |
| Okavango | River (basin) | misidentification | 13337 |
| Oshun | River (basin) | native | 88135 |
| Ouémé | River (basin) | native | 88135 |
| Pampana | River (basin) | misidentification | 94534 |
| Pool Malebo | Lake | misidentification | 45486 |
| Pra | River (basin) | native | 88135 |
| Rokel | River (basin) | misidentification | 94534 |
| Ruki | River (basin) | misidentification | 108775 |
| Saint John | River (basin) | misidentification | 94534 |
| Saint Paul | River (basin) | misidentification | 94534 |
| San Pedro | River (basin) | native | 81278 |
| Sanaga | River (basin) | native | 88135 |
| Sangha | River (basin) | misidentification | 108775 |
| Sankuru | River (basin) | misidentification | 108775 |
| Sassandra | River (basin) | native | 88135 |
| Senegal | River (basin) | misidentification | 94534 |
| Sewa | River (basin) | misidentification | 94534 |
| Sio | River (basin) | native | 88135 |
| Tano | River (basin) | native | 88135 |
| Tumba | Lake | misidentification | 108775 |
| Ubangui | River (basin) | misidentification | 108775 |
| Uélé | River (basin) | misidentification | 108775 |
| Volta | River (basin) | native | 81278 |
| Wagenia Falls | River (basin) | misidentification | 108775 |
| Wouri | River (basin) | native | 88135 |
| Zambezi | River (basin) | misidentification | 13337 |