| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Coral Sea and GBR | Sea/Bay/Gulf | native | 37816 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 37816 |
| Indian Ocean | Sea/Bay/Gulf | native | 30829 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Moro Gulf | Sea/Bay/Gulf | native | 106380 |
| Pacific Ocean | Sea/Bay/Gulf | native | 48497 |
| South China Sea | Sea/Bay/Gulf | native | 120710 |
| Southern China | Sea/Bay/Gulf | native | 120710 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 130287 |
| Tañon Strait | Sea/Bay/Gulf | native | 107276 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107854 |