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| No. | Valid Name | Author | English Name |
| 1. | Nannoperca australis | Günther, 1861 | Southern pygmy perch |
| 2. | Nannoperca obscura | (Klunzinger, 1872) | Yarra pygmy perch |
| 3. | Nannoperca oxleyana | Whitley, 1940 | Oxleyan pygmy perch |
| 4. | Nannoperca pygmaea | Morgan, Beatty & Adams, 2013 | Little Pygmy Perch |
| 5. | Nannoperca variegata | Kuiter & Allen, 1986 | Ewens pygmy perch |
| 6. | Nannoperca vittata | (Castelnau, 1873) | Western pygmy perch |