n = 28
| Scientific Name | Author | Valid Name | Family | English Name |
|---|---|---|---|---|
| Stigmatogobius amblyrhynchus | Bleeker, 1878 | Redigobius amblyrhynchus | Gobiidae | |
| Stigmatogobius borneensis | (Bleeker, 1850) | Stigmatogobius borneensis | Gobiidae | |
| Stigmatogobius brocki | (Herre, 1936) | Stigmatogobius sella | Gobiidae | |
| Stigmatogobius dewaali | (Weber, 1897) | Redigobius dewaali | Gobiidae | Checked goby |
| Stigmatogobius duospilus | Fowler, 1953 | Mugilogobius notospilus | Gobiidae | Freshwater mangrovegoby |
| Stigmatogobius durbanensis | (Barnard, 1927) | Mugilogobius durbanensis | Gobiidae | Durban goby |
| Stigmatogobius elegans | Larson, 2005 | Stigmatogobius elegans | Gobiidae | |
| Stigmatogobius gastrospilos | (Bleeker, 1853) | Pseudogobius poicilosoma | Gobiidae | Northern fatnose goby |
| Stigmatogobius hoevenii | (Bleeker, 1851) | Hemigobius hoevenii | Gobiidae | Banded mulletgoby |
| Stigmatogobius inhacae | Smith, 1959 | Mugilogobius mertoni | Gobiidae | Chequered mangrove goby |
| Stigmatogobius isognathus | Bleeker, 1878 | Redigobius isognathus | Gobiidae | |
| Stigmatogobius javanicus | (Bleeker, 1856) | Pseudogobius poicilosoma | Gobiidae | Northern fatnose goby |
| Stigmatogobius mingi | (Herre, 1936) | Hemigobius mingi | Gobiidae | |
| Stigmatogobius minima | (Hora, 1923) | Pseudogobius minimus | Gobiidae | Miniature snubnose goby |
| Stigmatogobius minutus | Takagi, 1957 | Redigobius bikolanus | Gobiidae | Speckled goby |
| Stigmatogobius neglectus | Koumans, 1932 | Pseudogobiopsis oligactis | Gobiidae | |
| Stigmatogobius oligactis | (Bleeker, 1875) | Pseudogobiopsis oligactis | Gobiidae | |
| Stigmatogobius oyensi | (de Beaufort, 1913) | Redigobius oyensi | Gobiidae | |
| Stigmatogobius penango | (Popta, 1922) | Redigobius penango | Gobiidae | |
| Stigmatogobius pleurostigma | (Bleeker, 1849) | Stigmatogobius pleurostigma | Gobiidae | |
| Stigmatogobius poicilosoma | (Bleeker, 1849) | Pseudogobius poicilosoma | Gobiidae | Northern fatnose goby |
| Stigmatogobius roemeri | (Weber, 1911) | Redigobius tambujon | Gobiidae | |
| Stigmatogobius sadanundio | (Hamilton, 1822) | Stigmatogobius sadanundio | Gobiidae | |
| Stigmatogobius sella | (Steindachner, 1881) | Stigmatogobius sella | Gobiidae | |
| Stigmatogobius signifer | Larson, 2005 | Stigmatogobius signifer | Gobiidae | |
| Stigmatogobius singapurensis | Bleeker, 1878 | Stigmatogobius borneensis | Gobiidae | |
| Stigmatogobius tambujon | (Bleeker, 1854) | Redigobius tambujon | Gobiidae | |
| Stigmatogobius versicolor | Smith, 1959 | Redigobius bikolanus | Gobiidae | Speckled goby |