| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5978 |
| Erhjen River | River (basin) | native | 36073 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47613 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9768 |
| Indian Ocean | Sea/Bay/Gulf | native | 2334 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 37588 |
| Polynesian Waters | Sea/Bay/Gulf | native | 5491 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Sikao Creek | River (basin) | native | 52823 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Tayabas Bay | Sea/Bay/Gulf | native | 82367 |
| Verde Island Passage | Sea/Bay/Gulf | native | 82367 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |