| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 4281 |
| Arabian Sea | Sea/Bay/Gulf | native | 1602 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5316 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5978 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 5316 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 48643 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1602 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5316 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5316 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5316 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5316 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 1602 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 4281 |
| South China Sea | Sea/Bay/Gulf | native | 5316 |
| Yellow Sea | Sea/Bay/Gulf | native | 12711 |