| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bay of Bengal | Sea/Bay/Gulf | native | 1479 |
| Chiku River | River (basin) | native | 36073 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Indian Ocean | Sea/Bay/Gulf | native | 591 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Mediterranean Sea | Sea/Bay/Gulf | introduced | 90881 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1479 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| Red Sea | Sea/Bay/Gulf | native | 96548 |
| Ruerhmen River | River (basin) | native | 36073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 125490 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tsengwen River | River (basin) | native | 36073 |
| Visayan Sea | Sea/Bay/Gulf | native | 110387 |