| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 2142 |
| Arabian Sea | Sea/Bay/Gulf | native | 129713 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2142 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 2142 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 2142 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Moro Gulf | Sea/Bay/Gulf | native | 106380 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2142 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2142 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2142 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2142 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 4517 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45334 |
| Sarangani Bay | Sea/Bay/Gulf | native | 106380 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 2142 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 10558 |
| Tawi tawi Bay | Sea/Bay/Gulf | native | 59110 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47588 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 37603 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 2142 |
| Yun-gan | Sea/Bay/Gulf | native | 43515 |