| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 45255 |
| Arabian Sea | Sea/Bay/Gulf | native | 3287 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3287 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3287 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3287 |
| Honda Bay | Sea/Bay/Gulf | native | 71000 |
| Indian Ocean | Sea/Bay/Gulf | native | 3197 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3287 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Persian Gulf | Sea/Bay/Gulf | native | 3287 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| Yellow Sea | Sea/Bay/Gulf | native | 3287 |