| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Arabian Sea | Sea/Bay/Gulf | native | 45255 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 9710 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5463 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 9710 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5463 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5463 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5463 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5463 |
| Polynesian Waters | Sea/Bay/Gulf | native | 37816 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southeast Australian Shelf | Sea/Bay/Gulf | native | 48497 |
| Yellow Sea | Sea/Bay/Gulf | native | 12711 |